The below sort card helps to remove duplicates in the input files.
Best Sort card
//MATCH EXEC PGM=SORT
//IN1 DD DSN=... input File1 (FB/10)
//IN2 DD DSN=... input File2 (FB/10)
//OUT12 DD SYSOUT=*
//SYSIN DD *
SUM FIELDS=NONE
/*
The other option is
OPTION EQUALS. We can eliminate duplicates.
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